English, Article edition: A FAST TECHNIQUE FOR DERIVING FREQUENT STRUCTURED PATTERNS FROM BIOLOGICAL DATA SETS GIORGIO TERRACINA

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Bookmark: http://trove.nla.gov.au/version/133220
Physical Description
  • article
Language
  • English

Edition details

Title
  • A FAST TECHNIQUE FOR DERIVING FREQUENT STRUCTURED PATTERNS FROM BIOLOGICAL DATA SETS
Author
  • GIORGIO TERRACINA
Physical Description
  • article
Notes
  • In the last years, the completion of the human genome sequencing showed a wide range of new challenging issues involving raw data analysis. In particular, the discovery of information implicitly encoded in biological sequences is assuming a prominent role in identifying genetic diseases and in deciphering biological mechanisms. This information is usually represented by patterns frequently occurring in the sequences. Because of biological observations, a specific class of patterns is becoming particularly interesting: frequent structured patterns. In this respect, it is biologically meaningful to look at both "exact" and "approximate" repetitions of pattens within the available sequences. This paper gives a contribution in this setting by providing algorithms which allow to discover frequent structured patterns, both in "exact" and "approximate" form, present in a collection of input biological sequences.
  • Sequence analysis, pattern discovery, frequent structured patterns, motifs
  • RePEc:wsi:nmncxx:v:01:y:2005:i:02:p:305-327
Language
  • English
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